Date
10.30.2025 -
Location
,
Workshop

Workshop at Western Washington University

Description

Join us for a workshop to learn about the Allen Institute for Neural Dynamics and some of the research we are doing. We will introduce the work of our institute, have hands-on demos of how to access and work with two data types (single cell morphologies and the Credit Assignment During Learning project),and hear from three recent WWU alums about their roles and contributions to our team science! This workshop is intended for Neurobiology or Computer Science students. We will lead a hands-on demo using python to explore data, but no previous coding experience is required.

https://codeocean.allenneuraldynamics.org/capsule/0685965/tree/v1

https://codeocean.allenneuraldynamics.org/capsule/0692322/tree/v1

Platforms accelerate our work

SLAP2

This platform uses a two-photon microscope SLAP2 that records patterns of synaptic input and output in individual neurons at hundreds to thousands of frames per second in mice performing complex behaviors, using a flexible scan system that combines a digital micromirror device (DMD) with a high-speed scanner.

Scientific Instrumentation & Process Engineering

The Scientific Instrumentation and Process Engineering (SIPE) team is a shared engineering resource within the Allen Institute, focused on enabling and scaling cutting-edge bioscience through integrated hardware and software systems.

Surgery

This team performs a variety of surgical procedures, including stereotaxic injections and implanting chronic cranial windows and Neuropixels probes.

Multi-Neuropixels Electrophysiology

This platform implements pioneering technology for highly reproducible, targeted, brain-wide, cell-type-specific electrophysiology to record neural activity from defined neuron types across the brain. Analysis and quality control of the electrophysiology data are fully automated.

Brain-Wide Anatomy at Synaptic Resolution

This platform combines innovative histology, ExA-SPIM microscopy, image handling, and machine learning to map the morphology and molecular identity of individual neurons across the whole brain at high throughput.

Fiber Photometry

This platform enables optical measurement of neural activity and neurotransmitter release in populations of neurons to study neural circuit dynamics in behaving animals.

Behavior

The Behavior platform uses advanced technology to implement a standardized, modular, multi-task virtual reality gymnasium for mice, with the goal to study brain function across different behaviors at scale.