Skip to main content
About
projects
platforms & shared resources
Tools, Publications, & Data
events
about
projects
platforms & shared resources
back to menu
platforms
behavior
Brain-Wide Anatomy at Synaptic Resolution
Fiber Photometry
Mesoscale Anatomy
Multi-Neuropixels Electrophysiology
Scientific Instrumentation & Process Engineering
SLAP2
Surgery
tools, publications, & data
events
Explore full team
Electrophysiology
Neural Dynamics
Josh Siegle
Sr. Scientist
Read bio at alleninstitute.org
Visit website
Projects
Brain-Wide Circuit Dynamics
OpenScope
Publications
Compression strategies for large-scale electrophysiology data
Deciphering neuronal variability across states reveals dynamic sensory encoding
Efficient and reproducible pipelines for spike sorting large-scale electrophysiology data
Neuropixels Opto: Combining high-resolution electrophysiology and optogenetics
SHIELD: Skull-shaped hemispheric implants enabling large-scale electrophysiology datasets in the mouse brain
Topographic structure and function of locus coeruleus norepinephrine neurons
Ultra-high density electrodes improve detection, yield, and cell type identification in neuronal recordings
Data Platforms
Multi-Neuropixels Electrophysiology
Open Tools
Acute Neuropixels Recording Through a 3D Printed Implant
AIND Metadata Schema
Dynamic Foraging Task Software
Electrophysiology pipeline collection
Modular Insertion System Design Files
Neuroglancer Github
Open Ephys GUI
OpenScope Databook
Parallax
Preparing a 3D Printed Implant for Acute In Vivo Electrophysiology
SpikeInterface
Structural MRI Using the University of Washington 14T Vertical Bore Bruker MRI
