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Data Platforms
Mesoscale Anatomy
SLAP2
Scientific Instrumentation & Process Engineering
Surgery
Multi-Neuropixels Electrophysiology
Brain-Wide Anatomy at Synaptic Resolution
Fiber Photometry
Behavior
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Neural Dynamics
Karel Svoboda
Executive Vice President, Director of Neural Dynamics
Read bio at alleninstitute.org
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Projects
Credit Assignment During Learning
Neural Dynamics in Multi-Regional Circuits with Thalamus in the Middle
Publications
Brain mechanism of foraging: Reward-dependent synaptic plasticity versus neural integration of values
Brain-wide neural activity underlying memory-guided movement
Compression strategies for large-scale electrophysiology data
Efficient and reproducible pipelines for spike sorting large-scale electrophysiology data
Expansion-assisted selective plane illumination microscopy for nanoscale imaging of centimeter-scale tissues
Exploring the correspondence between gene expression and thalamic nuclei using the THALMANAC resource
Fast and sensitive GCaMP calcium indicators for imaging neural populations
Functional reorganization of motor cortex connectivity during learning
Glutamate indicators with increased sensitivity and tailored deactivation rates
Neuropixels Opto: Combining high-resolution electrophysiology and optogenetics
Spike inference from calcium imaging data acquired with GCaMP8 indicators
Topographic structure and function of locus coeruleus norepinephrine neurons
Data Platforms
Multi-Neuropixels Electrophysiology
Open Tools
Electrophysiology pipeline collection
iGluSnFR4
jGCaMP8 transgenic mice
Multiphoton Mesoscope
YouTube - ExA-SPIM