Skip to main content
Aboutprojects
platforms & shared resources
platforms
Behavior
Brain-Wide Anatomy at Synaptic Resolution
Fiber Photometry
Mesoscale Anatomy
Multi-Neuropixels Electrophysiology
Population Calcium Imaging
Scientific Instrumentation & Process Engineering
SLAP2
Surgery
Tools, Publications, & Dataevents
aboutprojectsplatforms & shared resources
back to menu
platforms
Behavior
Brain-Wide Anatomy at Synaptic Resolution
Fiber Photometry
Mesoscale Anatomy
Multi-Neuropixels Electrophysiology
Population Calcium Imaging
Scientific Instrumentation & Process Engineering
SLAP2
Surgery
tools, publications, & dataevents
Explore full team
Scientific Operations
Neural Dynamics

Karel Svoboda

Executive Vice President, Director of Neural Dynamics
Read bio at alleninstitute.org
Visit website

Projects

Credit Assignment During Learning
Neural Dynamics in Multi-Regional Circuits with Thalamus in the Middle

Publications

Brain mechanism of foraging: Reward-dependent synaptic plasticity versus neural integration of values
Brain-wide neural activity underlying memory-guided movement
Compression strategies for large-scale electrophysiology data
Efficient and reproducible pipelines for spike sorting large-scale electrophysiology data
Expansion-assisted selective plane illumination microscopy for nanoscale imaging of centimeter-scale tissues
Exploring the correspondence between gene expression and thalamic nuclei using the THALMANAC resource
Fast and sensitive GCaMP calcium indicators for imaging neural populations
Functional reorganization of motor cortex connectivity during learning
Glutamate indicators with increased sensitivity and tailored deactivation rates
Neuropixels Opto: combining high-resolution electrophysiology and optogenetics
Next-generation brain observatories
Spike inference from calcium imaging data acquired with GCaMP8 indicators
Topographic structure and function of locus coeruleus norepinephrine neurons

Data Platforms

Multi-Neuropixels Electrophysiology

Open Tools

Electrophysiology pipeline collection
GIAnT: a Glutamate Imaging Analysis Toolbox
iGluSnFR4
Neuropixels Opto Code Ocean Collection
YouTube - ExA-SPIM
advancing science through open, collaborative research
Get the allen institute newsletter
Stay informed on the latest breakthroughs in neuroscience, bioscience, and AI-driven research.
overview
about usopen toolseventscontactnewsletter
projects
Behavior and Motor Control
Brain-Wide Circuit Dynamics
Brain-Wide Neuromodulation
Cell Types & Learning
Credit Assignment During Learning
Dynamic Routing
Information Foraging
Neural Dynamics in Multi-Regional Circuits with Thalamus in the Middle
OpenScope
Patch Foraging
Single-Cell Computation
platforms
Behavior
Brain-Wide Anatomy at Synaptic Resolution
Fiber Photometry
Mesoscale Anatomy
Multi-Neuropixels Electrophysiology
Population Calcium Imaging
Scientific Instrumentation & Process Engineering
SLAP2
Surgery
follow us/

allen institute, 615 Westlake Ave North, Seattle, WA 98109 +12065487055

© 0000 allen institute. all rights reserved.
privacy policyterms of usecitation policyemployee portalpolicy & compliancecookie settings